Overview of the BCMM Strain Library: Phyla of the Strain Library And their Accompanying Genera
Proteobacteria Firmicutes Actinobacteria Bacteroidetes Verrucomicrobia Fusobacteria Ascomycota Basidiomycota Achromobacter Aerococcus Actinobacterium Alistipes Akkermansia Fusobacterium Aspergillus Rhodotorula Acinetobacter Alliococcus Arthobacter Bacteroides Candida Agrobacterium Anaerococcus Asaccharobacter Chryseobacterium
Saccharomyces Alcanivorax Anaeromassilibacillus Atopobium Epilithonimonas Burkholderia Anaerostipes Bifidobacterium Parabacteroides Campylobacter Bacillus Brachybacterium Paraprevotella Citrobacter Blautia Brevibacterium Prevotella Comamonas Brevibacillus Collinsella Desulfovibrio Clostridioides Coriobacterium Edwardsiella Clostridium Corynebacterium
Ellagibacter Dolosigranulum Dermabacter Enterobacter Dorea Eggerthella Erwina Eubacterium Enorma Escherichia Facklamia Gardnerella Haemophilus Faecalibacterium Gordonibacter Hafnia Finegoldia Kocuria Helicobacter Flavonifractor Microbacterium Klebsiella Fusicatenibacter Micrococcus Moraxella Intestinibacillus Mycobacterium Myxococcus Lachnospiraceae Olsenella Neisseria Lactobacillus Paraeggerthella Novosphingobium Lactococcus Parolsenella Ochrobactrum Lactonifactor Propionibacterium
Proteus Leuconostoc Rhodococcus Providencia Melissococcus Rothia Pseudomonas Neglecta Rubneribacter Psuedoalteromonas Paenibacillus Slackia Pyschrobacter Paeniclostridium Salmonella Pediococcus Serratia Peptoniphilus Sphingobium Roseburia Sphingomonas Ruminococcus Sutterella Salinicoccus Vibrio Selenomonas Xanthomonas Senegaliamassilia
XL1-Blue Sporosarcina Staphylococcus Streptococcus
Bacteria
Fungi
Bacteria Genera (sorted alphabetically):
Achromobacter Acinetobacter Actinobacterium Actinomyces Aerococcus Agrobacterium Akkermansia Alcanivorax Alistipes Alliococcus Anaerococcus Anaeromassilibacillus Anaerostipes Arthobacter Asaccharobacter Atopobium Bacillus Bacteroidales Bacteroides Bifidobacterium Blautia Brachybacterium Brevibacillus Brevibacterium Burkholderia Campylobacter Chryseobacterium Citrobacter Clostridioides Clostridium Collinsella Comamonas Coriobacterium Corynebacterium Dermabacter Desulfovibrio Dolosigranulum Dorea Edwardsiella Eggerthella Ellagibacter Enorma Enterobacter Epilithonimonas Erwina Escherichia Escherichia-Shigella Eubacterium
Facklamia Faecalibacterium Finegoldia Flavonifractor Fusicatenibacter Fusobacterium Gardnerella Gordonibacter Haemophilus Hafnia Helicobacter Intestinibacillus Klebsiella Kocuria Lachnospiraceae Lactobacillus Lactococcus Lactonifactor Leuconostoc
Melissococcus Microbacterium Micrococcus Moraxella Mycobacterium Myxococcus Neglecta Neisseria Novosphingobium Ochrobactrum Olsenella Paenibacillus Paeniclostridium Parabacteroides Paraeggerthella Paraprevotella Parolsenella Pediococcus Peptoniphilus Prevotella Propionibacterium Proteus Providencia Pseudomonas Psuedoalteromonas Pyschrobacter Rhodococcus Roseburia Rothia Rubneribacter Ruminococcus
Salinicoccus Salmonella Selenomonas Senegaliamassilia Serratia Slackia Sphingobium Sphingomonas Sporosarcina Staphylococcus Stenotrophomonas Streptococcus Sutterella Vibrio Xanthomonas XL1-Blue
Candida Rhodotorula Saccharomyces Aspergillus
What Species of Achromobacter?
sp.
What species of Acinetobacter?
baumannii calcoaceticus lwoffii pittii radioresistans sp.
What species of Actinobacterium?
sp.
What species of Actinomyces?
viscosus
What species of Aerococcus?
viridans
What species of Agrobacterium?
What species of Akkermansia?
muciniphila
What species of Alcanivorax?
borkumensis
What species of Alistipes?
sp.
What species of Alliococcus?
sp.
What species of Anaerococcus?
sp. vaginalis
What species of Anaeromassilibacillus?
sp.
What species of Anaerostipes?
caccae
What species of Arthobacter?
agilis arilaitensis
What species of Asaccharobacter?
celatus
What species of Aspergillus?
fumigatus
What species of Atopobium?
minutum
What species of Bacillus?
aerius cereus megaterium methylotrophicus simplex sp. subtilis toyonensis/thuringiensis
What species of Bacteroidales?
sp.
What species of Bacteroides?
acidifaciens caccae cellulosilyticus clarus dorei eggerthii finegoldii fragilis kribbi ovatus sp. stercoris thetaiotaomicron uniformis vulgatus xylanisolvens
What species of Bifidobacterium?
adolescentis animalis bifidum breve longum sp.
producta sp.
What species of Brachybacterium?
alimentarium
What species of Brevibacillus?
sp. laterosporus
What species of Brevibacterium?
aurantiacum
What species of Burkholderia?
cepacia thailandensis
What species of Campylobacter?
concisus
albicans glabrata lusitaniae metapsilosis parapsilosis tropicalis
What species of Chryseobacterium?
sp.
What species of Citrobacter?
freundii rodentium
What species of Clostridioides?
[Clostridum] difficile
What species of Clostridium?
asparagiforme butyricum Difficile innocuum leptum neonatale saccharogumia scindens sordellii sp. spiroforme sporogenes symbiosum other
What species of Collinsella?
aerofaciens stercoris
What species of Comamonas?
testosteroni
What species of Coriobacterium?
sp.
What species of Corynebacterium?
accolens casei fastidiosum pseudodiphtheriticum sp. tuberculostearicum
What species of Dermabacter?
hominis
What species of Desulfovibrio?
piger
What species of Dolosigranulum?
pigrum
formicigenerans longicatena
What species of Edwardsiella?
tarda
What species of Eggerthella?
lenta sinesis
What species of Ellagibacter?
isourolithinifaciens
timonensis
What species of Enterobacter?
aerogenes cloacae xiangfangensis avium durans faecalis faecium gallinarum hirae sp.
What species of Epilithonimonas?
lactis
rhapontici
What species of Escherichia?
coli fergusonii
What species of Escherichia-Shigella?
sp.
What species of Eubacterium?
biforme dolichum eligens hadrus hallii limosum rectale sp.
What species of Facklamia?
hominis
What species of Faecalibacterium?
prausnitzii
What species of Finegoldia?
sp.
What species of Flavonifractor?
plautii
What species of Fusicatenibacter?
saccharivorans
What species of Fusobacterium?
nucleatum
What species of Gardnerella?
sp. vaginalis
What species of Gordonibacter?
pamelaeae urolithinfaciens sp.
What species of Haemophilus?
influenzae
alvei
What species of Helicobacter?
mastomyrinus
What species of Intestinibacillus?
sp.
What species of Klebsiella?
oxytoca pneumoniae
kristinae palustris
What species of Lachnospiraceae?
sp.
What species of Lactobacillus?
casei crispatus fermentum gasseri iners jensenii johnsonii murinus paracasei reuteri rhamnosus sakei salivarius sp.
What species of Lactococcus?
lactis
What species of Lactonifactor?
longoviformis sp.
What species of Leuconostoc?
citreum
What species of Melissococcus?
plutonius
What species of Microbacterium?
hydrocarbonoxydans sp. testaceum
What species of Micrococcus?
luteus
What species of Moraxella?
catarrhalis osloensis spp.
What species of Mycobacterium?
marinum shottsii xenopi
What species of Myxococcus?
xanthus
What species of Neglecta?
timonesis
What species of Neisseria?
sp.
What species of Novosphingobium?
aromaticivorans
What species of Ochrobactrum?
sp.
What species of Olsenella?
uli
What species of Paenibacillus?
polymyxa
What species of Paeniclostridium?
sordellii
What species of Parabacteroides?
distasonis merdae
What species of Paraeggerthella?
sp.
What species of Paraprevotella?
clara
What species of Parolsenella?
catena
What species of Peptoniphilus?
lacrimalis tyrrelliae
What species of Pediococcus?
pentosaceus
What species of Prevotella?
copri intermedia maltophilia
What species of Propionibacterium?
acnes granulosum
mirabilis penneri
What species of Providencia?
alcalifaciens rettgeri
What species of Pseudomonas?
aeruginosa entomophila monteilii mucidolens oryzihabitans parafulva putida sp. stutzeri xanthomarina
What species of Psuedoalteromonas?
haloplanktis
What species of Pyschrobacter?
alimentarius
What species of Rhodococcus?
erythropolis
What species of Rhodotorula?
mucilaginosa
What species of Roseburia?
inulinivorans
endophytica mucilaginosa
What species of Rubneribacter?
badeniensis
What species of Ruminococcus?
bromii obeum sp.
What species of Saccharomyces?
cerevisiae
What species of Salinicoccus?
iranensis
What species of Salmonella?
enterica
What species of Selenomonas?
noxia
What species of Senegaliamassilia?
anaerobia
What species of Serratia?
marcescens
exigua faecicanis heliotrinireducens isoflavoniconvertens
What species of Sphingobium?
yanoikuyae
What species of Sphingomonas
echinoides sp.
What species of Sporosarcina?
luteola sp.
What species of Staphylococcus?
aureus aureus (MSSA) capitis epidermidis haemolyticus hominis saprophyticus sp. succinus warneri xylosus
What species of Stenotrophomonas?
maltophilia sp.
What species of Streptococcus?
anginosus mitis pneumoniae salivarius sp. thermophilus viridans
What species of Sutterella?
wadsworthesis
casei
What species of Xanthomonas?
fuscans/perforans/citri
What species of XL1-Blue?
MRF'
Achromobacter sp. ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Acinetobacter baumannii ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Acinetobacter calcoaceticus ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Acinetobacter lwoffii ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Acinetobacter pittii ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Acinetobacter radioresistans ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Acinetobacter sp. ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Actinobacterium sp. ~ Strain/Source/Antibiotic Selection
Clone 555523/Nasal/None
*NS indicates 'not specified'
Actinomyces viscosus ~ strain/source/ antibiotic resistance
CDC W1053 [WVU 474]/ATCC/None
*NS indicates 'not specified'
Aerococcus viridans ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Agrobacterium sp. ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Akkermansia muciniphila ~ Strain/Source/Antibiotic Selection
NS/From DSMZ/None
*NS indicates 'not specified'
Alcanivorax borkumensis ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Alistipes sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Alliococcus sp. ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Anaerococcus sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Anaerococcus vaginalis ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Anaeromassilibacillus sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Anaerostipes caccae ~ Strain/Source/Antibiotic Selection
DSMZ_14662/From DSMZ/None
*NS indicates 'not specified'
Arthobacter agilis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Arthobacter arilaitensis ~ Strain/Source/Antibiotic Selection
JB182.1/NS/None
*NS indicates 'not specified'
Asaccharobacter celatus ~ Strain/Source/Antibiotic Selection
AP38TSA/Feces ~healthy 24yr male/None OB21_GAM11/Feces ~ obsese male/None
*NS indicates 'not specified'
Aspergillus fumigatus ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Atopobium minutum ~ Strain/Source/Antibiotic Selection
DSM_20586T
*NS indicates 'not specified'
Bacillus aerius ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Bacillus cereus ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Bacillus megaterium ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Bacillus methylotrophicus ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Bacillus simplex ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Bacillus sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None NS/Human Stool/None
*NS indicates 'not specified'
Bacillus subtilis ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Bacillus toyonensis/thuringiensis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Bacteroidales sp. ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Bacteroides acidifaciens ~ Strain/Source/Antibiotic Selection
DSMZ_15896/From DSMZ/None
Bacteroides caccae ~ Strain/Source/Antibiotic Selection
DSMZ_19029/From DSMZ/None NS/Lab: Laurie Comstock/None
*NS indicates 'not specified'
Bacteroides cellulosilyticus ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Bacteroides clarus ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Bacteroides dorei ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Bacteroides eggerthii ~ Strain/Source/Antibiotic Selection
DSMZ_20697/From DSMZ/None
Bacteroides finegoldii ~ Strain/Source/Antibiotic Selection
DSM_17565/DSMZ/None
Bacteroides fragilis ~ Strain/Source/Antibiotic Selection
638R/NS/None DSMZ_2151/From DSMZ/None NCTC_9343/NS/None NS/Human Stool/None NS/Lab: Laurie Comstock/None
*NS indicates 'not specified'
Bacteroides kribbi ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Bacteroides ovatus ~ Strain/Source/Antibiotic Selection
DSMZ_1896/From DSMZ/None NS/Human Stool/None NS/Lab: Laurie Comstock/None
*NS indicates 'not specified'
Bacteroides sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Bacteroides stercoris ~ Strain/Source/Antibiotic Selection
DSM_19555/DSMZ/None
Bacteroides thetaiotaomicron ~ Strain/Source/Antibiotic Selection
DSMZ_2079/From DSMZ/None NS/Human Stool/None NS/Lab: Laurie Comstock/None
*NS indicates 'not specified'
Bacteroides uniformis ~ Strain/Source/Antibiotic Selection
DSMZ_6597/From DSMZ/None NS/Human Stool/None
*NS indicates 'not specified'
Bacteroides vulgatus ~ Strain/Source/Antibiotic Selection
DSMZ_1447/From DSMZ/None NS/Human Stool/None NS/Lab: Laurie Comstock/None
*NS indicates 'not specified'
Bacteroides xylanisolvens ~ Strain/Source/Antibiotic Selection
DSM_18836/DSMZ/None
Bifidobacterium adolescentis ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Bifidobacterium animalis ~ Strain/Source/Antibiotic Selection
subsp._lactis_DSM10140/DSMZ/None NS/Human Stool/None
*NS indicates 'not specified'
Bifidobacterium bifidum ~ Strain/Source/Antibiotic Selection
DSM20456/DSMZ/None
Bifidobacterium breve ~ Strain/Source/Antibiotic Selection
DSM20213/DSMZ/None NS/Human Stool/None
*NS indicates 'not specified'
Bifidobacterium longum ~ Strain/Source/Antibiotic Selection
NWAFU0002/Human Stool/None subsp._longum_DSM20219/DSMZ/None NS/Human Stool/None
*NS indicates 'not specified'
Blautia producta ~ Strain/Source/Antibiotic Selection
DSM_2950/DSMZ/None DSM3507/DSMZ/None
Brachybacterium alimentarium ~ Strain/Source/Antibiotic Selection
JB7/NS/None
*NS indicates 'not specified'
Brevibacillus sp. ~ Strain/Source/Antibiotic Selection
TX4/Nasal/None
Brevibacillus laterosporus ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Brevibacterium aurantiacum ~ Strain/Source/Antibiotic Selection
JB5/NS/None
*NS indicates 'not specified'
Burkholderia cepacia ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Burkholderia thailandensis ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Campylobacter concisus ~ Strain/Source/Antibiotic Selection
2010-112708/Human Stool/None 2010-112825/Human Stool/None 2010-131105/Human Stool/None 2010-31374/Human Stool/None 2010-33561/Human Stool/None 2010-347972/Human Stool/None 2010-88823/Human Stool/None NS/Human/None NS/Human Saliva/None NS/Human Small Intestine/None NS/Human Stool/None
*NS indicates 'not specified'
Candida albicans ~ Strain/Source/Antibiotic Selection
DMic 165154/Human Stool/None SC5314/ATCC/None NS/Human Stool/None
*NS indicates 'not specified'
Candida glabrata ~ Strain/Source/Antibiotic Selection
SN1502/NS/None NS/Human Stool/None
*NS indicates 'not specified'
Candida lusitaniae ~ Strain/Source/Antibiotic Selection
Kw2009/07-MH/Human Stool/None
Candida metapsilosis ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Candida parapsilosis ~ Strain/Source/Antibiotic Selection
CMC 1899/Nasal/None CMC 1900/Nasal/None IFM 53470/Human Stool/None ySN1501/NS/None NS/Human Stool/None
*NS indicates 'not specified'
Candida tropicalis ~ Strain/Source/Antibiotic Selection
SN1500/NS/None
*NS indicates 'not specified'
Chryseobacterium sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Citrobacter freundii ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Citrobacter rodentium ~ Strain/Source/Antibiotic Selection
DSMZ_16636/NS/None NS/Mouse/None
*NS indicates 'not specified'
Clostridioides difficile ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Clostridium asparagiforme ~ Strain/Source/Antibiotic Selection
DSMZ_15981/From DSMZ/None
Clostridium butyricum ~ Strain/Source/Antibiotic Selection
W4/Human Stool/None
Clostridium Difficile ~ Strain/Source/Antibiotic Selection
630_∆erm_∆TcdA_∆TcdB/NS/None
*NS indicates 'not specified'
Clostridium innocuum ~ Strain/Source/Antibiotic Selection
DSM1286/DSMZ/None
Clostridium leptum ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Clostridium neonatale ~ Strain/Source/Antibiotic Selection
LCDC(=NML)00-A-017/Human Stool/None
Clostridium saccharogumia ~ Strain/Source/Antibiotic Selection
DSM_17460/DSMZ/None
Clostridium scindens ~ Strain/Source/Antibiotic Selection
DSMZ_5676/From DSMZ/None VPI 13733/ATCC/None
Clostridium sordellii ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Clostridium sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Clostridium spiroforme ~ Strain/Source/Antibiotic Selection
DSM_1552/ATCC 29900/None NS/From DSMZ/None
*NS indicates 'not specified'
Clostridium sporogenes ~ Strain/Source/Antibiotic Selection
ATCC_15579/Lab: CJ / Michael Fischbach lab/None ATCC_15579_(pMTL83153-cas9)/Lab: Kathy Lam & Renuka Nayak/None
Clostridium symbiosum ~ Strain/Source/Antibiotic Selection
DSM934/DSMZ/None
Collinsella aerofaciens ~ Strain/Source/Antibiotic Selection
DSMZ_3979/From DSMZ/None UC1/Isolated from Crohn's or ulcerative colitis patient/None UC5/Isolated from Crohn's or ulcerative colitis patient/None NS/Human Stool/None
*NS indicates 'not specified'
Collinsella stercoris ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Comamonas testosteroni ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Corynebacterium accolens ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Coriobacterium sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Corynebacterium casei ~ Strain/Source/Antibiotic Selection
JB4/NS/None
*NS indicates 'not specified'
Corynebacterium fastidiosum ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Corynebacterium pseudodiphtheriticum ~ Strain/Source/Antibiotic Selection
NS/Nasal/None NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Corynebacterium sp. ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Corynebacterium tuberculostearicum ~ Strain/Source/Antibiotic Selection
Medalle X [ATCC 35529, CCUG 35692, CCUG 45418, CIP 107291, LDC-20, MX]/ATCC/None
Dermabacter hominis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Desulfovibrio piger ~ Strain/Source/Antibiotic Selection
VPI C3-23 [DSM 749]/ATCC/None
Dolosigranulum pigrum ~ Strain/Source/Antibiotic Selection
15550/Nasal/None NS/Nasal/None
*NS indicates 'not specified'
Dorea formicigenerans ~ Strain/Source/Antibiotic Selection
DSM_3992/DSMZ/None
Dorea longicatena ~ Strain/Source/Antibiotic Selection
DSMZ_13814/From DSMZ/None NS/Human Stool/None
*NS indicates 'not specified'
Edwardsiella tarda ~ Strain/Source/Antibiotic Selection
DSMZ_30052/From DSMZ/None
Eggerthella lenta ~ Strain/Source/Antibiotic Selection
20457/NS/None 21916/NS/None 1-1-60A_FAA/biopsy terminal ileum~healthy 19yr male/None 11C/NS/None 11R5/Derivative of UCSF2243 resistant to Phage KL11/None 11R7/Derivative of UCSF2243 resistant to Phage KL11/None 11R9/Derivative of UCSF2243 resistant to Phage KL11/None 11RE1-1/Derivative of UCSF2243 resistant to Phage KL11/None 11RE1-2/Derivative of UCSF2243 resistant to Phage KL11/None 11RE2-1/Derivative of UCSF2243 resistant to Phage KL11/None 11RE2-2/Derivative of UCSF2243 resistant to Phage KL11/None 11RE3-1/Derivative of UCSF2243 resistant to Phage KL11/None 11RE3-2/Derivative of UCSF2243 resistant to Phage KL11/None 11RE4-1/Derivative of UCSF2243 resistant to Phage KL11/None 11RE4-2/Derivative of UCSF2243 resistant to Phage KL11/None 11RE5-1/Derivative of UCSF2243 resistant to Phage KL11/None 11RE5-2/Derivative of UCSF2243 resistant to Phage KL11/None 11RE6-1/Derivative of UCSF2243 resistant to Phage KL11/None 11RE6-2/Derivative of UCSF2243 resistant to Phage KL11/None 14A/NS/None 16A/NS/None 22C/NS/None 28B/NS/None 32-6-I_6_NA/Feces ~ Healthy 42 yr old female /None A2/From Balskus/None AB12_#2/Feces ~ Healthy 13 yr male /None AB8_#2/Feces ~ Healthy 8 yr male /None AN51LG/Feces ~ healthy 24 yr male/None ATCC_25559_(DSM 2243)/ATCC/None CC7/5_D5_2/Human colon cancer biopsy/None CC8/2_BHI2/Human colon cancer biopsy/None CC8/6_D5_4/Human colon cancer biopsy/None DIAB165/Lab: From Chelsi Cassily from unknown collaborator at Broad/None DIAB233/Lab: From Chelsi Cassily from unknown collaborator at Broad/None DSM2243_(type)/NS/None DSMZ_11767/From DSMZ/None DSMZ_11863/From DSMZ/None DSMZ_15644/From DSMZ/None MR_#12/Feces ~ 5 yr male with ASD/None RC4/6F/Human colon cancer biopsy/None SECO-Mt75m2/Lab: Mchael Blaut- German Institute of Human Nutrition/None UC2/Isolated from Crohn's or ulcerative colitis patient/None UC5/Isolated from Crohn's or ulcerative colitis patient/None Valencia/NS/None W1_BHI_6/NS/None NS/DSMD/None NS/Human Stool/None NS/Vayu/None OB21_GAM31/Fecal sample of individual with Crohn's/None
*NS indicates 'not specified'
Eggerthella sinesis ~ Strain/Source/Antibiotic Selection
DSMZ_16107/From DSMZ/None
Ellagibacter isourolithinifaciens ~ Strain/Source/Antibiotic Selection
DSM_104140/DSMZ/None
Enorma timonensis ~ Strain/Source/Antibiotic Selection
DSM_26111/DSMZ/None
Enterobacter aerogenes ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Enterobacter cloacae ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Enterobacter xiangfangensis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Enterobacter avium ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Enterobacter durans ~ Strain/Source/Antibiotic Selection
PON12/Human Stool/None
Enterobacter faecalis ~ Strain/Source/Antibiotic Selection
DSM_2570/DSMZ/None DSM_2570/NS/None UIP23/Human Stool/None NS/House Dust/None NS/Human Stool/None
*NS indicates 'not specified'
Enterobacter faecium ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Enterobacter gallinarum ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Enterobacter hirae ~ Strain/Source/Antibiotic Selection
ATCC 9790/Human Stool/None NS/Human Stool/None
*NS indicates 'not specified'
Enterobacter sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None NS/Human Stool/None
*NS indicates 'not specified'
Epilithonimonas lactis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Erwina rhapontici ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Escherichia coli ~ Strain/Source/Antibiotic Selection
(pCas9)/Addgene/Chloramphenicol 10 (pCRRNA-G0-R0)/Addgene/Kanamycin 25 (pCRRNA-G0-R20)/Addgene/Kanamycin 25 (pCRRNA-G20-R0)/Addgene/Kanamycin 25 (pCRRNA-G20-R20)/Addgene/Kanamycin 25 (pGRB)/Addgene/Ampicillin 100 (pJKR-H-tetR)/From Addgene/Ampicillin 100 (pLC13)/Addgene/Ampicillin 100 (pOPS0377)/Addgene/Kanamycin 25 (pREDCas9)_(30°C)/Addgene/Spectinomycin 100 (pSG10-pGlnA-mCherry)/Addgene/Ampicillin 100 Addgene_(DB3.1)_pOSIP-KH_(KanR,_HK022)_(30°C)/Addgene/Kanamycin Addgene_(DB3.1)_pOSIP-KL_(KanR,_Lambda)_(30°C)/Addgene/Kanamycin Addgene_(DB3.1)_pOSIP-KO_(KanR,_186)_(30°C)/Addgene/Kanamycin Addgene_(DB3.1)_pOSIP-KP_(KanR,_Phi80)_(30°C)/Addgene/Kanamycin Addgene_(DB3.1)_pOSIP-KT_(KanR,_P21)_(30°C)/Addgene/Kanamycin Addgene_(DB3.1)_pOSIP-TH_(TetR,_HK022)_(30°C)/Addgene/Tetracycline Addgene_(DB3.1)_pOSIP-TT_(TetR,_P21)_(30°C)/Addgene/Tetracycline AG1/ASKA Collection/None AG1_+_pCA24N/ASKA Collection/Chloramphenicol AG1_pCA24N-carA/ASKA Collection/Chloramphenicol AG1_pCA24N-carB/ASKA Collection/Chloramphenicol AG1_pCA24N-cdd/ASKA Collection/Chloramphenicol AG1_pCA24N-dcd/ASKA Collection/Chloramphenicol AG1_pCA24N-deoA/ASKA Collection/Chloramphenicol AG1_pCA24N-dut/ASKA Collection/Chloramphenicol AG1_pCA24N-glnG_(ntrC)/ASKA Collection/Chloramphenicol AG1_pCA24N-nagD_(umpH)/ASKA Collection/Chloramphenicol AG1_pCA24N-ndk/ASKA Collection/Chloramphenicol AG1_pCA24N-nrdA/ASKA Collection/Chloramphenicol AG1_pCA24N-nrdB/ASKA Collection/Chloramphenicol AG1_pCA24N-nupC/ASKA Collection/Chloramphenicol AG1_pCA24N-nupG/ASKA Collection/Chloramphenicol AG1_pCA24N-preTA//Chloramphenicol AG1_pCA24N-pyrB/ASKA Collection/Chloramphenicol AG1_pCA24N-pyrF/ASKA Collection/Chloramphenicol AG1_pCA24N-pyrH/ASKA Collection/Chloramphenicol AG1_pCA24N-pyrI/ASKA Collection/Chloramphenicol AG1_pCA24N-tdk/ASKA Collection/Chloramphenicol AG1_pCA24N-thyA/ASKA Collection/Chloramphenicol AG1_pCA24N-tmk/ASKA Collection/Chloramphenicol AG1_pCA24N-udk/ASKA Collection/Chloramphenicol AG1_pCA24N-udp/ASKA Collection/Chloramphenicol AG1_pCA24N-uidA_(gusA)/ASKA Collection/Chloramphenicol AG1_pCA24N-ung/ASKA Collection/Chloramphenicol AG1_pCA24N-upp/ASKA Collection/Chloramphenicol AG1_pCA24N-uraA/ASKA Collection/Chloramphenicol AG1_pCA24N-ycdC_(rutR)/ASKA Collection/Chloramphenicol AG1_pCA24N-ycdG_(rutG)/ASKA Collection/Chloramphenicol AG1_pCA24N-ycdM_(rutA)/ASKA Collection/Chloramphenicol AG1_pCA24N-yeiA_(preA)/ASKA Collection/Chloramphenicol AG1_pCA24N-yeiT_(preT)/ASKA Collection/Chloramphenicol AG1_pCA24N-yjjG/ASKA Collection/Chloramphenicol AV01::pAV01_(30°C)/Antoine Vigouroux, David Bikard Lab/Kanamycin 25 AV01::pAV02_(30°C)/Antoine Vigouroux, David Bikard Lab/Kanamycin 25 B/ATCC 23848/None bacteriophage_P1/ATCC 25404-B1/None bacteriophage_T7/ATCC BAA1025-B2/None BL21(DE3)_pET19TEV/Lab: Made by Sara Vasquez and PS/Amp BL21(DE3)_pET19TEV-elen2530/Lab: Made by Sara Vasquez and PS/Amp BL21(DE3)_pET19TEV-elen2532/Lab: Made by Sara Vasquez and PS/Amp BW25113/Keio Collection/None BW25113_Delta_preTA/Lab: PS/None BW25113_DpreTA_+_preTA/Lab: Created by Peter SCreated by Peter S/None BW25113_DpreTA::KanR_+_preTA/Lab: Created by Peter S/Kanamycin BW25113_pCA24N-preTA/Lab: NS/Chloramphenicol BW25113_preTA::KanR/Lab: PS/Kan.25 ug/ml BW25113_ΔcarA/Keio Collection/Kanamycin BW25113_ΔcarB/Keio Collection/Kanamycin BW25113_Δcdd/Keio Collection/Kanamycin BW25113_ΔcodA/Keio Collection/Kanamycin BW25113_Δdcd/Keio Collection/Kanamycin BW25113_ΔdeoA/Keio Collection/Kanamycin BW25113_ΔglnG_(ntrC)/Keio Collection/Kanamycin BW25113_ΔglyA/Keio Collection/Kanamycin BW25113_ΔmetF/Keio Collection/Kanamycin BW25113_ΔnagD_(umpH)/Keio Collection/Kanamycin BW25113_Δndk/Keio Collection/Kanamycin BW25113_ΔnupC/Keio Collection/Kanamycin BW25113_ΔnupG/Keio Collection/Kanamycin BW25113_ΔpyrB/Keio Collection/Kanamycin BW25113_ΔpyrF/Keio Collection/Kanamycin BW25113_ΔpyrI/Keio Collection/Kanamycin BW25113_Δtdk/Keio Collection/Kanamycin BW25113_Δudk/Keio Collection/Kanamycin BW25113_Δudp/Keio Collection/Kanamycin BW25113_ΔuidA_(gusA)/Keio Collection/Kanamycin BW25113_Δung/Keio Collection/Kanamycin BW25113_Δupp/Keio Collection/Kanamycin BW25113_ΔuraA/Keio Collection/Kanamycin BW25113_ΔycdC_(rutR)/Keio Collection/Kanamycin BW25113_ΔycdG_(rutG)/Keio Collection/Kanamycin BW25113_ΔycdM_(rutA)/Keio Collection/Kanamycin BW25113_ΔyeiA_(preA)/Keio Collection/Kanamycin BW25113_ΔyeiT_(preT)/Keio Collection/Kanamycin BW25113_Δygf/Keio Collection/Kanamycin BW25113_ΔyjjG/Keio Collection/Kanamycin C600/Carolina Biological Supply/None DH10B_pSIM19/Court lab/Spectinomycin DH10B_pSIM27/Court lab/Tetracycline DH5a_(pBC KS(-))/Phagemid from Agilent/Chloramphenicol 10 DH5a_(pBluescript II KS(-))/Phagemid from Agilent/Ampicillin 100 DH5a_(pRU1103)/Addgene/None DH5a_pJK02/Addgene/Chloramphenicol DH5a_pKM126/Addgene/Chloramphenicol DH5a_pKM197/Addgene/Chloramphenicol DH5alpha/Lab/None DH5alpha_+_pKC1218/Wright lab/APRA E4644_(pLC143)_(30°C)/Antoine Vigouroux, David Bikard Lab/Kanamycin 25 ETPU_+_pUZ8002_(Amp)/Wright lab/CAM and AMP ETPU_+_pUZ8002_(Kan)/Wright lab/CAM and KAN FDA strain Seattle 1946/ATCC/None LC-E02/Addgene 78551/None LC-E03/Addgene 78552/None MAGIC_(pGT-BA3-1)/Carlotta Ronda / Harris Wang Lab/Diaminopimelic acid 50, Carbenicillin 50 MAGIC_(pGT-ST4-3)/Carlotta Ronda / Harris Wang Lab/Diaminopimelic acid 50, Tetracycline 20 MAGIC_(pGTh4-AC4-1)/Carlotta Ronda / Harris Wang Lab/Diaminopimelic acid 50, Carbenicillin 50 or Chloramphenicol 20 MG1655_(ATCC 700926)/Strain from ATCC/None MG1655_Delta_preTA/Lab: Created by Peter S/None MG1655_DpreTA_+_preTA/Lab: Created by Peter S/None MG1655_DpreTA_+_preTA_SmR/Lab: Created by Peter S/Streptomycin MG1655_DpreTA_+_preTA-Ac/Lab: Created by Peter S/None MG1655_DpreTA_+_preTA-Lr/Lab: Created by Peter S/None MG1655_DpreTA_+_preTA-Of_(synth)/Lab: Created by Peter S/None MG1655_DpreTA_+_preTA-Se/Lab: Created by Peter S/None MG1655_DpreTA_SmR/Lab: Created by Peter S/None MG1655_DpreTA::KanR_+_preTA/Lab: Created by Peter S/Kanamycin MG1655_preTA::KanR/Lab: Created by Peter S/Kan.25 ug/ml MG1655_SmR/Lab: Created by Peter S by spontaneous mutation on LB+streptomycin media/Streptomycin NEB_Stable_(pCas9-GFPT-f1A)/Lab: Created by Paola Soto Perez / Kathy Lam/Carbenicillin or Chloramphenicol NEB_Stable_(pCas9-GFPT-f1B)/Lab: Created by Paola Soto Perez / Kathy Lam/Carbenicillin or Chloramphenicol NEB_Stable_(pCas9-NT-f1A)/Lab: Created by Paola Soto Perez / Kathy Lam/Carbenicillin or Chloramphenicol NEB_Stable_(pCas9-NT-f1B)/Lab: Created by Paola Soto Perez / Kathy Lam/Carbenicillin or Chloramphenicol pCP20/Gross lab/CAM pRK24/Addgene/Tet/Amp pSAM-Bt/NS/Amp (in E. coli) Rosetta_2_pET151/D-TOPO+Bproducta_4534/Lab: Elizabeth Bess/Ampicillin + Chloramphenicol Rosetta_2_pET151/D-TOPO+Elenta_376/Lab: Elizabeth Bess/Ampicillin + Chloramphenicol Rosetta_2_pET151/D-TOPO+Llongoviformis_3414/Lab: Elizabeth Bess/Ampicillin + Chloramphenicol Rosetta_2_pET151/D-TOPO+Llongoviformis_3415/Lab: Elizabeth Bess/Ampicillin + Chloramphenicol Rosetta_pET19btev/Lab: Elizabeth Bess/AMP and CAM Rosetta_pET19btev_ber_#1/Lab: Elizabeth Bess/AMP and CAM Rosetta_pET19btev_ber_#3/Lab: Elizabeth Bess/AMP and CAM Rosetta_pET19btev_ber_#4/Lab: Made by enb/AMP and CAM Rosetta(DE3)_2/NS/Cam Rosetta(DE3)_2_pET19TEV/Lab: Made by Sara Vasquez and PS/Cam + Amp Rosetta(DE3)_2_pET19TEV-elen2530/Lab: Made by Sara Vasquez and PS/Cam + Amp Rosetta(DE3)_2_pET19TEV-elen2532/Lab: Made by Sara Vasquez and PS/Cam + Amp Rosetta(DE3)_pET19TEV-FPGS-Ca/Lab: Made by Kye, Peter and Renuka/AMP and CAM S17-1_(pMTL82254)/CJ / Michael Fischbach lab/Erythromycin 200 S17-1_(pMTL83153-cas9)/CJ / Michael Fischbach lab/Chloramphenicol 25 S17-1_λ_pir/Fischbach lab/None S17-1_λ_pir_+_pNUB2-ermG/Fischbach lab/Amp (E. coli), Erm (Bacteroidetes) S17-1_λ_pir_+_pNUB2-ermG-usBT1311/Fischbach lab/Amp (E. coli), Erm (Bacteroidetes) S17-1_λ_pir_+_pNUB2-tetQ/Fischbach lab/Amp (E. coli), Tetracycline (Bacteroidetes) S17-1_λ_pir_+_pSAM-Bt/Goodman lab/Amp (E. coli) ST18/Paraic Cuiv lab/Optional Streptomycin stbl3/Invitrogen/None stbl3_(pCMVdR8.91)/Mukherjee lab/Carbenicillin 50 stbl3_(pLentiCRISPRv2+ABCB1gRNA1)/Genscript/Carbenicillin 50 stbl3_(pMD2.G)/Mukherjee lab/Carbenicillin 50 TOP_+_pET19TEV/NS/Amp TOP_10_pET151/D-TOPO+Bproducta_4534/Lab: Elizabeth Bess/Ampicillin + Chloramphenicol TOP_10_pET151/D-TOPO+Elenta_376/Lab: Elizabeth Bess/Ampicillin + Chloramphenicol TOP_10_pET151/D-TOPO+Llongoviformis_3414/Lab: Elizabeth Bess/Ampicillin + Chloramphenicol TOP_10_pET151/D-TOPO+Llongoviformis_3415/Lab: Elizabeth Bess/Ampicillin + Chloramphenicol TOP10/Invitrogen/None TOP10_+_pSET152/From the Wright lab/APRA TOP10_elen2322-DSM_pET19TEV/Lab: Made by Sara Vasquez and PS/Amp TOP10_elen2522-11C_pET19TEV/Lab: Made by Sara Vasquez and PS/Amp TOP10_elen2530-DSM_pET19TEV/Lab: Made by Sara Vasquez and PS/Amp TOP10_pCA24N/Lab: Laurie Comstock/Chloramphenicol TOP10_pCA24N-preTA/NS/Chloramphenicol TOP10_pET19TEV/Lab: From PS, via Georgina Cox/AMP (E. coli) TOP10_pET19TEV-FPGS-Ca/Lab: Made by Kye, Peter and Renuka/AMP TOP10_preTA-Lr-pINT1/Lab: Created by Peter S/None TOP10_preTA-Se-pINT1/Lab: Created by Peter S/None TOP10_pTIPQC1/Lab: Oren Rosenberg via Tomohiro Tamura/AMP (E. coli), CAM (Rhodococcus) TOP10_pTIPQC2/Lab: Oren Rosenberg via Tomohiro Tamura/AMP (E. coli), CAM (Rhodococcus) TOP10_pTIPQT1/Lab: Oren Rosenberg via Tomohiro Tamura/AMP (E. coli), TET (Rhodococcus) TOP10_pTIPQT2/Lab: Oren Rosenberg via Tomohiro Tamura/AMP (E. coli), TET (Rhodococcus) TOP10-cgr2-pSET/NS/Apra TOP10-ELEN2530-pSET/NS/Apra W1485/ATCC 12435/None W1655_F-_(ATCC 23737)/Strain from ATCC/None W1655_F+_(ATCC 23590)/Strain from ATCC/None W1655_F+_rpsL-SmR/Lab: Kathy Lam/Streptomycin 100 W1655_F+_rpsL-SmR_sfgfp (KL114)/Lab: Kathy Lam/Streptomycin 100 W1655_F+_rpsL-SmR::pAV01_(30°C)_(sfgfp)/Lab: Kathy Lam/Streptomycin 100 Kanamycin 25 W1655_F+_rpsL-SmR::pAV02_(30°C)_(mcherry)/Lab: Kathy Lam/Streptomycin 100 Kanamycin 25 W3104/Carolina Biological Supply/None W3110_(ATCC 27325)/Strain from ATCC/None WG5/ATCC 700078/None XL1_Blue_pSIJ8/Add gene/Amp ΔuidA/Lab: Redinbo Lab/None ΔuidA_pET28a/Lab: Redinbo Lab/Kanamycin ΔuidA_pET28a-uidA/Lab: Redinbo Lab/Kanamycin NS/Human Stool/None Addgene_(DB3.1)_pOSIP-KC_(KanR,_PhiC31)_(30°C)/Addgene/Kanamycin
*NS indicates 'not specified'
Escherichia fergusonii ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Escherichia-Shigella sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Eubacterium biforme ~ Strain/Source/Antibiotic Selection
VPI C17-5/ATCC/None
Eubacterium dolichum ~ Strain/Source/Antibiotic Selection
DSM3991/DSMZ/None DSMZ_3991/From DSMZ/None
Eubacterium eligens ~ Strain/Source/Antibiotic Selection
DSMZ_3376/From DSMZ/None
Eubacterium hadrus ~ Strain/Source/Antibiotic Selection
ATCC29173/ATCC/None
Eubacterium hallii ~ Strain/Source/Antibiotic Selection
DSM_3353/DSMZ/None
Eubacterium limosum ~ Strain/Source/Antibiotic Selection
DSM_20543/DSMZ/None
Eubacterium rectale ~ Strain/Source/Antibiotic Selection
DSMZ_17629/From DSMZ/None
Eubacterium sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Facklamia hominis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Faecalibacterium prausnitzii ~ Strain/Source/Antibiotic Selection
DSM17677/DSMZ/None
Finegoldia sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None NS/Human Stool/None
*NS indicates 'not specified'
Flavonifractor plautii ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Fusicatenibacter saccharivorans ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Fusobacterium nucleatum ~ Strain/Source/Antibiotic Selection
subsp._nucleatum/DSMZ/None
Gardnerella sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Gardnerella vaginalis ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Gordonibacter urolithinfaciens ~ Strain/Source/Antibiotic Selection
DSMZ_27213/From DSMZ/None
Gordonibacter pamelaeae ~ Strain/Source/Antibiotic Selection
3C/NS/None DSMZ_19378/From DSMZ/None NS/Human Stool/None
Gordonibacter sp. ~ Strain/Source/Antibiotic Selection
28C/NS/None
*NS indicates 'not specified'
Haemophilus influenzae ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Hafnia alvei ~ Strain/Source/Antibiotic Selection
JB232/NS/None
*NS indicates 'not specified'
Helicobacter mastomyrinus ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Intestinibacillus sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Klebsiella oxytoca ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Klebsiella pneumoniae ~ Strain/Source/Antibiotic Selection
NS/ATCC/None NS/Human Stool/None
*NS indicates 'not specified'
Kocuria kristinae ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Kocuria palustris ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Lachnospiraceae sp. ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Lactobacillus casei ~ Strain/Source/Antibiotic Selection
CAU9547/Human Stool/None NS/House Dust/None
*NS indicates 'not specified'
Lactobacillus crispatus ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Lactobacillus fermentum ~ Strain/Source/Antibiotic Selection
44303/Human Stool/None DQ-4/Human Stool/None NS/Human Stool/None
*NS indicates 'not specified'
Lactobacillus gasseri ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Lactobacillus iners ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Lactobacillus jensenii ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Lactobacillus johnsonii ~ Strain/Source/Antibiotic Selection
NS/Mouse/None
*NS indicates 'not specified'
Lactobacillus murinus ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Lactobacillus paracasei ~ Strain/Source/Antibiotic Selection
M16/Human Stool/None NS/Human Stool/None
*NS indicates 'not specified'
Lactobacillus reuteri ~ Strain/Source/Antibiotic Selection
ATCC23272/ATCC/None
Lactobacillus rhamnosus ~ Strain/Source/Antibiotic Selection
NS/ATCC/None NS/N/A/None
*NS indicates 'not specified'
Lactobacillus sakei ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Lactobacillus salivarius ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Lactobacillus sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Lactococcus lactis ~ Strain/Source/Antibiotic Selection
JB241a/NS/None
*NS indicates 'not specified'
Lactonifactor longoviformis ~ Strain/Source/Antibiotic Selection
DSM17459/DSMZ/None NS/Human Stool/None
*NS indicates 'not specified'
Lactonifactor sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Leuconostoc citreum ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Melissococcus plutonius ~ Strain/Source/Antibiotic Selection
NCDO 2443/ATCC/None
Microbacterium hydrocarbonoxydans ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Microbacterium sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Microbacterium testaceum ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Micrococcus luteus ~ Strain/Source/Antibiotic Selection
ATCC_4698/ATCC/None NS/ATCC/None NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Moraxella catarrhalis ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Moraxella osloensis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Moraxella spp. ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Mycobacterium marinum ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Mycobacterium shottsii ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
Mycobacterium xenopi ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Myxococcus xanthus ~ Strain/Source/Antibiotic Selection
BBeebe/NS/None
*NS indicates 'not specified'
Neglecta timonesis ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Neisseria sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Novosphingobium aromaticivorans ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Ochrobactrum sp. ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Olsenella uli ~ Strain/Source/Antibiotic Selection
DSM_7084/DSMZ/None
Paenibacillus polymyxa ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Paeniclostridium sordellii ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Parabacteroides distasonis ~ Strain/Source/Antibiotic Selection
DSMZ_20701/From DSMZ/None
Parabacteroides merdae ~ Strain/Source/Antibiotic Selection
DSMZ_19495/From DSMZ/None NS/Human Stool/None
*NS indicates 'not specified'
Paraeggerthella sp. strain
CD11/Isolated from Crohn's or ulcerative colitis patient/None RC2/2A/Tissue biopsy of healthy rectum/None
Parolsenella catena ~ Strain/Source/Antibiotic Selection
DSM_105194/DSMZ/None
Paraprevotella clara ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Pediococcus pentosaceus ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Peptoniphilus lacrimalis ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Peptoniphilus tyrrelliae ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Prevotella copri ~ Strain/Source/Antibiotic Selection
DSMZ_18205/From DSMZ/None
Prevotella intermedia ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Prevotella maltophilia ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Propionibacterium acnes ~ Strain/Source/Antibiotic Selection
NS/House Dust/None NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Propionibacterium granulosum ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Proteus mirabilis ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Proteus penneri ~ Strain/Source/Antibiotic Selection
DSMZ_4544/From DSMZ/None
Providencia alcalifaciens ~ Strain/Source/Antibiotic Selection
DSMZ_30120/From DSMZ/None
Providencia rettgeri ~ Strain/Source/Antibiotic Selection
DSMZ_4542/From DSMZ/None
Pseudomonas aeruginosa ~ Strain/Source/Antibiotic Selection
F11/Lab: Joel Berry / Joe Bondy-Denomy lab/None PA14_[DMS3-m]/Lab: Adair Borges / Joe Bondy Denomy Lab/None PA14_delta-CRISPR/Lab: Adair Borges / Joe Bondy Denomy Lab/None PA14_delta-CRISPR2/Lab: Adair Borges / Joe Bondy Denomy Lab/None PAO1_att::IC_p30_e.v./Lab: Joel Berry / Joe Bondy-Denomy lab/Gentamicin 30 PAO1_att::IC_p30-phi30-gRNA/Lab: : Joel Berry / Joe Bondy-Denomy lab/Gentamicin 30 PAO1_tn7::ICegg_pGuide-JBD30/Lab: Joe Bondy-Denomy lab/Gentamycin (50 microgram/mL) NS/ATCC/None NS/Lab: Lina Leon / Joe Bondy-Denomy lab/None NS/Sinus/None
*NS indicates 'not specified'
Pseudomonas entomophila ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Pseudomonas monteilii ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Pseudomonas mucidolens ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Pseudomonas oryzihabitans ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Pseudomonas parafulva ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Pseudomonas putida ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Pseudomonas sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Pseudomonas stutzeri ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Pseudomonas xanthomarina ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Psuedoalteromonas haloplanktis ~ Strain/Source/Antibiotic Selection
JB197/NS/None
*NS indicates 'not specified'
Pyschrobacter alimentarius ~ Strain/Source/Antibiotic Selection
JB193/NS/None
*NS indicates 'not specified'
Rhodococcus erythropolis strain
L88/Lab: Oren Rosenberg/None
Rhodotorula mucilaginosa ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Roseburia inulinivorans ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Rothia endophytica ~ Strain/Source/Antibiotic Selection
NS/House Dust/None NS/Nasal/None
*NS indicates 'not specified'
Rubneribacter badeniensis ~ Strain/Source/Antibiotic Selection
DSM_105129/DSMZ/None
Rothia mucilaginosa ~ Strain/Source/Antibiotic Selection
UR071/NasalNone
Ruminococcus bromii ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Ruminococcus obeum ~ Strain/Source/Antibiotic Selection
DSMZ_25238/From DSMZ/None
Saccharomyces cerevisiae ~ Strain/Source/Antibiotic Selection
NS/ATCC/None NS/Human Stool/None
*NS indicates 'not specified'
Salinicoccus iranensis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Salmonella enterica ~ Strain/Source/Antibiotic Selection
DSMZ_17058/From DSMZ/None
Selenomonas noxia ~ Strain/Source/Antibiotic Selection
VPI D9B-5/ATCC/None
Senegaliamassilia anaerobia ~ Strain/Source/Antibiotic Selection
AP69FAA/Feces of 24yr old healthy male/None
Serratia marcescens ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Slackia exigua ~ Strain/Source/Antibiotic Selection
CCUG_44588T/Lab: Mchael Blaut- German Institute of Human Nutrition/None
Slackia heliotrinireducens ~ Strain/Source/Antibiotic Selection
DSM_20476T/Lab: Mchael Blaut- German Institute of Human Nutrition/None
Slackia isoflavoniconvertens ~ Strain/Source/Antibiotic Selection
DSM_22006 OB21_GAM31
Sphingobium yanoikuyae ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Sphingomonas echinoides ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Sphingomonas sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Sporosarcina sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Sporosarcina luteola ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Staphylococcus aureus ~ Strain/Source/Antibiotic Selection
ATCC_25923/NS/None s1266-9/Nasal/None NS/House Dust/None NS/Human Stool/None NS/N/A/None NS/Nasal/None
*NS indicates 'not specified'
Staphylococcus aureus (MSSA) ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Staphylococcus capitis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None NS/Nasal/None
*NS indicates 'not specified'
Staphylococcus epidermidis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None NS/Human Fetal Meconium/None NS/Human Stool/None NS/Nasal/None
*NS indicates 'not specified'
Staphylococcus haemolyticus ~ Strain/Source/Antibiotic Selection
NS/House Dust/None NS/Human Fetal Meconium/None NS/Nasal/None
*NS indicates 'not specified'
Staphylococcus hominis ~ Strain/Source/Antibiotic Selection
NS/House Dust/None NS/Nasal/None
*NS indicates 'not specified'
Staphylococcus saprophyticus ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Staphylococcus sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None
*NS indicates 'not specified'
Staphylococcus succinus ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Staphylococcus warneri ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
Staphylococcus xylosus ~ Strain/Source/Antibiotic Selection
BC4/NS/None
*NS indicates 'not specified'
Stenotrophomonas maltophilia strain
NS/ATCC/None
Stenotrophomonas sp. ~ Strain/Source/Antibiotic Selection
NS/Human Fetal Meconium/None other
*NS indicates 'not specified'
Streptococcus anginosus ~ Strain/Source/Antibiotic Selection
NS/ATCC/None
*NS indicates 'not specified'
Streptococcus mitis ~ Strain/Source/Antibiotic Selection
NS/Nasal/None
*NS indicates 'not specified'
Streptococcus pneumoniae ~ Strain/Source/Antibiotic Selection
NS/ATCC/None NS/Nasal/None
*NS indicates 'not specified'
Streptococcus salivarius strain
NS/Nasal/None
*NS indicates 'not specified'
Streptococcus sp. ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Streptococcus thermophilus ~ Strain/Source/Antibiotic Selection
TA61/NS/None
*NS indicates 'not specified'
Streptococcus viridans ~ Strain/Source/Antibiotic Selection
NS/NS/None
*NS indicates 'not specified'
Sutterella wadsworthesis ~ Strain/Source/Antibiotic Selection
NS/Human Stool/None
*NS indicates 'not specified'
Vibrio casei ~ Strain/Source/Antibiotic Selection
JB196/NS/None Other
*NS indicates 'not specified'
Xanthomonas fuscans/perforans/citri ~ Strain/Source/Antibiotic Selection
NS/House Dust/None
*NS indicates 'not specified'
XL1-Blue MRF' ~ Strain/Source/Antibiotic Selection
MRF'/Strain from Agilent/Tetracycline 10
Isolation Source/Reservoir of the Strain
Add gene ASKA Collection ATCC Biopsy Carolina Biological Supply DSMZ Genscript House Dust Human Fetal Meconium Human Saliva Human Small Intestine Human Stool Invitrogen Isolated from Crohn's or ulcerative colitis patient Keio Collection Lab Strain (created in lab, isolation source not specified) Mouse Nasal Agilent No Specified Isolation Source
Escherichia coli XL1_Blue_pSIJ8 Escherichia coli (pCas9) Escherichia coli (pCRRNA-G0-R0) Escherichia coli (pCRRNA-G0-R20) Escherichia coli (pCRRNA-G20-R0) Escherichia coli (pCRRNA-G20-R20) Escherichia coli (pGRB) Escherichia coli (pJKR-H-tetR) Escherichia coli (pLC13) Escherichia coli (pOPS0377) Escherichia coli (pREDCas9)_(30°C) Escherichia coli (pSG10-pGlnA-mCherry) Escherichia coli Addgene_(DB3.1)_pOSIP-KH_(KanR,_HK022)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KL_(KanR,_Lambda)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KO_(KanR,_186)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KP_(KanR,_Phi80)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KT_(KanR,_P21)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-TH_(TetR,_HK022)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-TT_(TetR,_P21)_(30°C) Escherichia coli DH5a_(pRU1103) Escherichia coli DH5a_pJK02 Escherichia coli DH5a_pKM126 Escherichia coli DH5a_pKM197 Escherichia coli pRK24 Escherichia coli Addgene_(DB3.1)_pOSIP-KC_(KanR,_PhiC31)_(30°C) Escherichia coli LC-E02 Escherichia coli LC-E03
Strains from the ASKA Collection:
Escherichia coli AG1 Escherichia coli AG1_+_pCA24N Escherichia coli AG1_pCA24N-carA Escherichia coli AG1_pCA24N-carB Escherichia coli AG1_pCA24N-cdd Escherichia coli AG1_pCA24N-dcd Escherichia coli AG1_pCA24N-deoA Escherichia coli AG1_pCA24N-dut Escherichia coli AG1_pCA24N-glnG_(ntrC) Escherichia coli AG1_pCA24N-nagD_(umpH) Escherichia coli AG1_pCA24N-ndk Escherichia coli AG1_pCA24N-nrdA Escherichia coli AG1_pCA24N-nrdB Escherichia coli AG1_pCA24N-nupC Escherichia coli AG1_pCA24N-nupG Escherichia coli AG1_pCA24N-pyrB Escherichia coli AG1_pCA24N-pyrF Escherichia coli AG1_pCA24N-pyrH Escherichia coli AG1_pCA24N-pyrI Escherichia coli AG1_pCA24N-tdk Escherichia coli AG1_pCA24N-thyA Escherichia coli AG1_pCA24N-tmk Escherichia coli AG1_pCA24N-udk Escherichia coli AG1_pCA24N-udp Escherichia coli AG1_pCA24N-uidA_(gusA) Escherichia coli AG1_pCA24N-ung Escherichia coli AG1_pCA24N-upp Escherichia coli AG1_pCA24N-uraA Escherichia coli AG1_pCA24N-ycdC_(rutR) Escherichia coli AG1_pCA24N-ycdG_(rutG) Escherichia coli AG1_pCA24N-ycdM_(rutA) Escherichia coli AG1_pCA24N-yeiA_(preA) Escherichia coli AG1_pCA24N-yeiT_(preT) Escherichia coli AG1_pCA24N-yjjG
Actinomyces viscosus CDC W1053 [WVU 474] Aspergillus fumigatus NS Bacillus cereus NS Bacillus simplex NS Burkholderia thailandensis NS Clostridium leptum NS Clostridium scindens VPI 13733 Comamonas testosteroni NS Corynebacterium tuberculostearicum Medalle X [ATCC 35529, CCUG 35692, CCUG 45418, CIP 107291, LDC-20, MX] Desulfovibrio piger VPI C3-23 [DSM 749] Eggerthella lenta ATCC_25559_(DSM 2243) Enterobacter cloacae NS Escherichia coli ATCC 23848 Escherichia coli bacteriophage_P1(25404-B1) Escherichia coli bacteriophage_T7(BAA1025-B2) Escherichia coli FDA strain Seattle 1946 Escherichia coli MG1655_(ATCC 700926) Escherichia coli W1655_F-_(ATCC 23737) Escherichia coli W1655_F+_(ATCC 23590) Escherichia coli W3110_(ATCC 27325) Eubacterium biforme VPI C17-5 Eubacterium hadrus ATCC29173 Faecalibacterium prausnitzii NS Klebsiella pneumoniae NS Lactobacillus iners NS Lactobacillus reuteri ATCC23272 Lactobacillus rhamnosus NS Lactobacillus sakei NS Melissococcus plutonius NCDO 2443 Micrococcus luteus ATCC_4698 Micrococcus luteus NS Moraxella spp. NS Mycobacterium marinum NS Mycobacterium shottsii NS Mycobacterium xenopi NS Novosphingobium aromaticivorans NS Paenibacillus polymyxa NS Pediococcus pentosaceus NS Prevotella intermedia NS Prevotella maltophilia NS Pseudomonas aeruginosa NS Pseudomonas stutzeri NS Ruminococcus bromii NS Selenomonas noxia VPI D9B-5 Serratia marcescens NS Sphingomonas echinoides NS Stenotrophomonas maltophilia NS Streptococcus anginosus NS Streptococcus pneumoniae NS Candida albicans SC5314 Saccharomyces cerevisiae NS Clostridium spiroforme DSM_1552 Escherichia coli W1485 Escherichia coli WG5
*NS indicates the microbe has not specified down to the strain level
Strains isolated from Biopsies ~ Biopsy Type:
terminal ileum Healthy 19yr male healthy rectum Human colon cancer
Strains isolated from terminal ileum Healthy 19yr male:
Eggerthella lenta 1-1-60A_FAA
Strains isolated from a healthy rectum:
Paraeggerthella sp. RC2/2A
Strains isolated from individuals with Human colon cancer:
Eggerthella lenta CC7/5_D5_2 Eggerthella lenta CC8/2_BHI2 Eggerthella lenta CC8/6_D5_4 Eggerthella lenta RC4/6F
Strains from Carolina Biological Supply:
Escherichia coli C600 Escherichia coli W3104
Strains from German Collection of Microorganisms and Cell Cultures (DSMZ):
Akkermansia muciniphila NS Anaerococcus hydrogenalis DSMZ_14662 Bacteroides acidifaciens DSMZ_15896 Bacteroides caccae DSMZ_19029 Bacteroides eggerthii DSMZ_20697 Bacteroides finegoldii DSM_17565 Bacteroides fragilis DSMZ_2151 Bacteroides ovatus DSMZ_1896 Bacteroides stercoris DSM_19555 Bacteroides thetaiotaomicron DSMZ_2079 Bacteroides uniformis DSMZ_6597 Bacteroides vulgatus DSMZ_1447 Bacteroides xylanisolvens DSM_18836 Bifidobacterium animalis subsp._lactis_DSM10140 Bifidobacterium bifidum DSM20456 Bifidobacterium breve DSM20213 Bifidobacterium longum subsp._longum_DSM20219 Blautia producta DSM_2950 Blautia producta DSM3507 Clostridium asparagiforme DSMZ_15981 Clostridium innocuum DSM1286 Clostridium saccharogumia DSM_17460 Clostridium spiroforme NS Clostridium symbiosum DSM934 Collinsella aerofaciens DSMZ_3979 Dorea formicigenerans DSM_3992 Eggerthella lenta DSMZ_11767 Eggerthella lenta DSMZ_11863 Eggerthella lenta DSMZ_15644 Eggerthella lenta NS Eggerthella sinesis DSMZ_16107 Ellagibacter isourolithinifaciens DSM_104140 Enorma timonensis DSM_26111 Enterobacter faecalis DSM_2570 Eubacterium biforme DSMZ_3991 Eubacterium eligens DSMZ_3376 Eubacterium hallii DSM_3353 Eubacterium limosum DSM_20543 Eubacterium rectale DSMZ_17629 Faecalibacterium prausnitzii DSM17677 Fusobacterium nucleatum subsp._nucleatum Gordonibacter urolithinfaciens DSMZ_27213 Gordonibacter pamelaeae DSMZ_19378 Lactonifactor longoviformis DSM17459 Olsenella uli DSM_7084 Parolsenella catena DSM_105194 Prevotella copri DSMZ_18205 Proteus penneri DSMZ_4544 Providencia alcalifaciens DSMZ_30120 Providencia rettgeri DSMZ_4542 Rubneribacter badeniensis DSM_105129 Salmonella enterica DSMZ_17058 Saccharomyces dolichum DSM3991 Dorea longicatena DSMZ_13814 Edwardsiella tarda DSMZ_30052 Parabacteroides distasonis DSMZ_20701 Parabacteroides merdae DSMZ_19495
*NS indicates the microbe has not specified down to the strain level
Escherichia coli stbl3_(pLentiCRISPRv2+ABCB1gRNA1)
Strains isolated from house dust:
Acinetobacter baumannii NS Acinetobacter calcoaceticus NS Acinetobacter lwoffii NS Acinetobacter pittii NS Acinetobacter radioresistans NS Acinetobacter sp. NS Aerococcus viridans NS Arthobacter agilis NS Bacillus aerius NS Bacillus cereus NS Bacillus megaterium NS Bacillus methylotrophicus NS Bacillus toyonensis/thuringiensis NS Brevibacillus laterosporus NS Dermabacter hominis NS Enterobacter xiangfangensis NS Enterobacter faecalis NS Epilithonimonas lactis NS Facklamia hominis NS Kocuria palustris NS Lactobacillus casei NS Lactobacillus gasseri NS Lactobacillus murinus NS Leuconostoc citreum NS Microbacterium testaceum NS Moraxella osloensis NS Propionibacterium acnes NS Propionibacterium granulosum NS Pseudomonas entomophila NS Pseudomonas monteilii NS Pseudomonas mucidolens NS Pseudomonas oryzihabitans NS Pseudomonas parafulva NS Pseudomonas putida NS Pseudomonas xanthomarina NS Rothia endophytica NS Salinicoccus iranensis NS Sphingobium yanoikuyae NS Sporosarcina luteola NS Staphylococcus aureus NS Staphylococcus capitis NS Staphylococcus epidermidis NS Staphylococcus haemolyticus NS Staphylococcus hominis NS Staphylococcus warneri NS Xanthomonas fuscans/perforans/citri NS
*NS indicates the microbe has not specified down to the strain level
Strains isolated from human fetal meconium:
Bacillus sp. NS Chryseobacterium sp. NS Coriobacterium sp. NS Corynebacterium pseudodiphtheriticum NS Enterobacter sp. NS Finegoldia sp. NS Gardnerella sp. NS Lactobacillus sp. NS Microbacterium sp. NS Micrococcus luteus NS Neisseria sp. NS Propionibacterium acnes NS Pseudomonas sp. NS Sphingomonas sp. NS Sporosarcina sp. NS Staphylococcus epidermidis NS Staphylococcus haemolyticus NS Staphylococcus sp. NS Stenotrophomonas sp. NS
*NS indicates the microbe has not specified down to the strain level
Strains isolated from human saliva:
Campylobacter concisus NS
*NS indicates the microbe has not specified down to the strain level
Strains isolated from human small intestine:
Campylobacter concisus NS
*NS indicates the microbe has not specified down to the strain level
Strains isolated from human stool ~ stool type:
Human Stool (unspecified) 24yr old male healthy 5 yr old male with ASD 13 yr old male healthy 42 yr old female healthy 8 yr old male healthy Obese male individual with Crohns disease
Strains isolated from stool of a 24yr old male healthy:
Senegaliamassilia anaerobia AP69FAA Eggerthella lenta AN51LG Asaccharobacter celatus AP38TSA
Strain isolated from stool from a 5 yr old male with ASD:
Eggerthella lenta MR_#12
Strain isolated from stool of a 13 yr old male healthy:
Eggerthella lenta AB12_#2
Strain isolated from stool of a 42 yr old female healthy:
Eggerthella lenta 32-6-I_6_NA
Strain isolated from the stool of a 8 yr old male healthy:
Eggerthella lenta AB8_#2
Strain isolated from the stool of an obese male:
Asaccharobacter celatus OB21_GAM11
Strain isolated from the stool of an individual with Crohn's disease:
Eggerthella lenta OB21_GAM31
Strains Isolated from human stool (details of individual not specified):
Alistipes sp. NS Anaerococcus sp. NS Anaerococcus vaginalis NS Bacillus sp. NS Bacteroides cellulosilyticus NS Bacteroides clarus NS Bacteroides dorei NS Bacteroides fragilis NS Bacteroides ovatus NS Bacteroides sp. NS Bacteroides thetaiotaomicron NS Bacteroides uniformis NS Bacteroides vulgatus NS Bifidobacterium animalis NS Bifidobacterium breve NS Bifidobacterium longum NWAFU0002 Bifidobacterium longum NS Campylobacter concisus 2010-112708 Campylobacter concisus 2010-112825 Campylobacter concisus 2010-131105 Campylobacter concisus 2010-31374 Campylobacter concisus 2010-33561 Campylobacter concisus 2010-347972 Campylobacter concisus 2010-88823 Campylobacter concisus NS Clostridioides difficile NS Clostridium butyricum W4 Clostridium neonatale LCDC(=NML)00-A-017 Clostridium sordellii NS Clostridium sp. NS Collinsella aerofaciens NS Collinsella stercoris NS Dorea longicatena NS Eggerthella lenta NS Enterobacter avium NS Enterobacter durans PON12 Enterobacter faecalis UIP23 Enterobacter faecalis NS Enterobacter faecium NS Enterobacter gallinarum NS Enterobacter hirae ATCC 9790 Enterobacter hirae NS Enterobacter sp. NS Escherichia coli NS Escherichia fergusonii NS Escherichia-Shigella fergusonii NS Eubacterium sp. NS Finegoldia sp. NS Fusicatenibacter saccharivorans NS Gordonibacter pamelaeae NS Klebsiella pneumoniae NS Lactobacillus casei CAU9547 Lactobacillus fermentum 44303 Lactobacillus fermentum DQ-4 Lactobacillus fermentum NS Lactobacillus paracasei M16 Lactobacillus paracasei NS Lactobacillus salivarius NS Lactonifactor longoviformis NS Lactonifactor sp. NS Paeniclostridium sordellii NS Parabacteroides merdae NS Peptoniphilus tyrrelliae NS Staphylococcus aureus NS Staphylococcus epidermidis NS Streptococcus sp. NS Sutterella wadsworthesis NS Anaeromassilibacillus sp. NS Candida albicans DMic 165154 Candida albicans NS Candida glabrata NS Candida lusitaniae Kw2009/07-MH Candida parapsilosis IFM 53470 Candida parapsilosis NS Intestinibacillus sp. NS Rhodotorula mucilaginosa NS Saccharomyces cerevisiae NS
*NS indicates the microbe has not specified down to the strain level
Escherichia coli stbl3 Escherichia coli TOP10
Strains isolated from Crohn's or ulcerative colitis patient:
Collinsella aerofaciens UC1 Collinsella aerofaciens UC5 Eggerthella lenta UC2 Eggerthella lenta UC5 Paraeggerthella sp. CD11
Strains from the Keio Collection:
Escherichia coli BW25113 Escherichia coli BW25113_ΔcarA Escherichia coli BW25113_ΔcarB Escherichia coli BW25113_Δcdd Escherichia coli BW25113_ΔcodA Escherichia coli BW25113_Δdcd Escherichia coli BW25113_ΔdeoA Escherichia coli BW25113_ΔglnG_(ntrC) Escherichia coli BW25113_ΔglyA Escherichia coli BW25113_ΔmetF Escherichia coli BW25113_ΔnagD_(umpH) Escherichia coli BW25113_Δndk Escherichia coli BW25113_ΔnupC Escherichia coli BW25113_ΔnupG Escherichia coli BW25113_ΔpyrB Escherichia coli BW25113_ΔpyrF Escherichia coli BW25113_ΔpyrI Escherichia coli BW25113_Δtdk Escherichia coli BW25113_Δudk Escherichia coli BW25113_Δudp Escherichia coli BW25113_ΔuidA_(gusA) Escherichia coli BW25113_Δung Escherichia coli BW25113_Δupp Escherichia coli BW25113_ΔuraA Escherichia coli BW25113_ΔycdC_(rutR) Escherichia coli BW25113_ΔycdG_(rutG) Escherichia coli BW25113_ΔycdM_(rutA) Escherichia coli BW25113_ΔyeiA_(preA) Escherichia coli BW25113_ΔyeiT_(preT) Escherichia coli BW25113_Δygf Escherichia coli BW25113_ΔyjjG
Strains isolated/created from specific laboratory experiments (Exact source/reservoir of origin unknown) :
Escherichia coli DH5alpha Pseudomonas aeruginosa PAO1_tn7::ICegg_pGuide-JBD30 Pseudomonas aeruginosa F11 Escherichia coli Rosetta(DE3)_pET19TEV-FPGS-Ca Escherichia coli NEB_Stable_(pCas9-GFPT-f1A) Escherichia coli NEB_Stable_(pCas9-GFPT-f1B) Escherichia coli NEB_Stable_(pCas9-NT-f1A) Escherichia coli NEB_Stable_(pCas9-NT-f1B) Pseudomonas aeruginosa PA14_[DMS3-m] Pseudomonas aeruginosa PA14_delta-CRISPR Pseudomonas aeruginosa PA14_delta-CRISPR2 Escherichia coli AV01::pAV01_(30°C) Escherichia coli AV01::pAV02_(30°C) Escherichia coli E4644_(pLC143)_(30°C) Eggerthella lenta A2 Escherichia coli MAGIC_(pGT-BA3-1) Escherichia coli MAGIC_(pGT-ST4-3) Escherichia coli MAGIC_(pGTh4-AC4-1) Escherichia coli S17-1_(pMTL82254) Escherichia coli S17-1_(pMTL83153-cas9) Clostridium sporogenes ATCC_15579 Escherichia coli DH10B_pSIM19 Escherichia coli DH10B_pSIM27 Eggerthella coli W1655_F+_rpsL-SmR_sfgfp_mcherry(KL204) Escherichia coli Rosetta_2_pET151/D-TOPO+Bproducta_4534 Escherichia coli Rosetta_2_pET151/D-TOPO+Elenta_376 Escherichia coli Rosetta_2_pET151/D-TOPO+Llongoviformis_3414 Escherichia coli Rosetta_2_pET151/D-TOPO+Llongoviformis_3415 Escherichia coli Rosetta_pET19btev Escherichia coli Rosetta_pET19btev_ber_#1 Escherichia coli Rosetta_pET19btev_ber_#3 Escherichia coli TOP_10_pET151/D-TOPO+Bproducta_4534 Escherichia coli TOP_10_pET151/D-TOPO+Elenta_376 Escherichia coli TOP_10_pET151/D-TOPO+Llongoviformis_3414 Escherichia coli TOP_10_pET151/D-TOPO+Llongoviformis_3415 Escherichia coli S17-1_λ_pir Escherichia coli S17-1_λ_pir_+_pNUB2-ermG Escherichia coli S17-1_λ_pir_+_pNUB2-ermG-usBT1311 Escherichia coli S17-1_λ_pir_+_pNUB2-tetQ Eggerthella lenta DIAB165 Eggerthella lenta DIAB233 Escherichia coli S17-1_λ_pir_+_pSAM-Bt Escherichia coli pCP20 Pseudomonas aeruginosa PAO1_att::IC_p30_e.v. Pseudomonas aeruginosa PAO1_att::IC_p30-phi30-gRNA Escherichia coli W1655_F+_rpsL-SmR Escherichia coli W1655_F+_rpsL-SmR_sfgfp (KL114) Escherichia coli W1655_F+_rpsL-SmR::pAV01_(30°C)_(sfgfp) Escherichia coli W1655_F+_rpsL-SmR::pAV02_(30°C)_(mcherry) Clostridium sporogenes ATCC_15579_(pMTL83153-cas9) Escherichia coli TOP10_pET19TEV-FPGS-Ca Bacteroides caccae NS Bacteroides fragilis NS Bacteroides ovatus NS Bacteroides thetaiotaomicron NS Bacteroides vulgatus NS Escherichia coli TOP10_pCA24N Pseudomonas aeruginosa NS Escherichia coli Rosetta_pET19btev_ber_#4 Escherichia coli BL21(DE3)_pET19TEV Escherichia coli BL21(DE3)_pET19TEV-elen2530 Escherichia coli BL21(DE3)_pET19TEV-elen2532 Eggerthella lenta SECO-Mt75m2 Slackia exigua CCUG_44588T Slackia heliotrinireducens DSM_20476T Escherichia coli stbl3_(pCMVdR8.91) Escherichia coli stbl3_(pMD2.G) Escherichia coli BW25113_pCA24N-preTA Rhodococcus erythropolis L88 Escherichia coli TOP10_pTIPQC1 Escherichia coli TOP10_pTIPQC2 Escherichia coli TOP10_pTIPQT1 Escherichia coli TOP10_pTIPQT2 Escherichia coli ST18 Escherichia coli BW25113_DpreTA_+_preTA Escherichia coli BW25113_DpreTA::KanR_+_preTA Escherichia coli BW25113_preTA::KanR Escherichia coli MG1655_Delta_preTA Escherichia coli MG1655_DpreTA_+_preTA Escherichia coli MG1655_DpreTA_+_preTA_SmR Escherichia coli MG1655_DpreTA_+_preTA-Ac Escherichia coli MG1655_DpreTA_+_preTA-Lr Escherichia coli MG1655_DpreTA_+_preTA-Of_(synth) Escherichia coli MG1655_DpreTA_+_preTA-Se Escherichia coli MG1655_DpreTA_SmR Escherichia coli MG1655_DpreTA::KanR_+_preTA Escherichia coli MG1655_preTA::KanR Escherichia coli TOP10_preTA-Lr-pINT1 Escherichia coli TOP10_preTA-Se-pINT1 Escherichia coli MG1655_SmR Escherichia coli BW25113_Delta_preTA Escherichia coli TOP10_pET19TEV Escherichia coli ΔuidA Escherichia coli ΔuidA_pET28a Escherichia coli ΔuidA_pET28a-uidA Escherichia coli Rosetta(DE3)_2_pET19TEV Escherichia coli Rosetta(DE3)_2_pET19TEV-elen2530 Escherichia coli Rosetta(DE3)_2_pET19TEV-elen2532 Escherichia coli TOP10_elen2322-DSM_pET19TEV Escherichia coli TOP10_elen2522-11C_pET19TEV Escherichia coli TOP10_elen2530-DSM_pET19TEV Eggerthella lenta NS Escherichia coli DH5alpha_+_pKC1218 Escherichia coli ETPU_+_pUZ8002_(Amp) Escherichia coli ETPU_+_pUZ8002_(Kan) Escherichia coli TOP10_+_pSET152
*NS indicates the microbe has not specified down to the strain level
Strains isolated from mice:
Citrobacter rodentium NS Lactobacillus johnsonii NS
*NS indicates the microbe has not specified down to the strain level
Strains isolated from the nasal passageway:
Actinobacterium sp. Clone 555523 Alliococcus sp. NS Brevibacillus sp. TX4 Corynebacterium accolens NS Corynebacterium fastidiosum NS Corynebacterium pseudodiphtheriticum NS Corynebacterium sp. NS Dolosigranulum pigrum 15550 Dolosigranulum pigrum NS Kocuria kristinae NS Moraxella catarrhalis NS Pseudomonas aeruginosa NS Rothia mucilaginosa NS Staphylococcus aureus s1266-9 Staphylococcus aureus NS Staphylococcus aureus (MSSA) NS Staphylococcus capitis NS Staphylococcus epidermidis NS Staphylococcus haemolyticus NS Staphylococcus hominis NS Staphylococcus saprophyticus NS Staphylococcus succinus NS Streptococcus mitis NS Streptococcus pneumoniae NS Streptococcus salivarius NS Candida parapsilosis CMC 1899 Candida parapsilosis CMC 1900
*NS indicates the microbe has not specified down to the strain level
Escherichia coli DH5a_(pBC KS(-)) Escherichia coli DH5a_(pBluescript II KS(-)) XL1-Blue MRF' MRF'
Strains with no specified isolation source:
Achromobacter sp. NS Agrobacterium sp. NS Alcanivorax borkumensis NS Arthobacter arilaitensis JB182.1 Bacillus simplex NS Bacillus subtilis NS Bacteroidales sp. NS Bacteroides fragilis 638R Bacteroides fragilis NCTC_9343 Bacteroides kribbi NS Bifidobacterium adolescentis NS Brachybacterium alimentarium JB7 Brevibacterium aurantiacum JB5 Burkholderia cepacia NS Citrobacter freundii NS Citrobacter rodentium DSMZ_16636 Clostridium Difficile 630_∆erm_∆TcdA_∆TcdB Corynebacterium casei JB4 Eggerthella lenta 20457 Eggerthella lenta 21916 Eggerthella lenta 11C Eggerthella lenta 14A Eggerthella lenta 16A Eggerthella lenta 22C Eggerthella lenta 28B Eggerthella lenta DSM2243_(type) Eggerthella lenta Valencia Eggerthella lenta W1_BHI_6 Enterobacter aerogenes NS Enterobacter faecalis DSM_2570 Erwina rhapontici NS Escherichia coli pSAM-Bt Escherichia coli Rosetta(DE3)_2 Escherichia coli TOP_+_pET19TEV Escherichia coli TOP10_pCA24N-preTA Escherichia coli TOP10-cgr2-pSET Escherichia coli TOP10-ELEN2530-pSET Flavonifractor plautii NS Gardnerella vaginalis NS Gordonibacter pamelaeae 3C Gordonibacter sp. 28C Haemophilus influenzae NS Hafnia alvei JB232 Helicobacter mastomyrinus NS Klebsiella oxytoca NS Lachnospiraceae sp. NS Lactobacillus crispatus NS Lactobacillus jensenii NS Lactobacillus rhamnosus NS Lactococcus lactis JB241a Microbacterium hydrocarbonoxydans NS Myxococcus xanthus Beebe Neglecta timonesis NS Ochrobactrum sp. NS Paraprevotella clara NS Peptoniphilus lacrimalis NS Proteus mirabilis NS Psuedoalteromonas haloplanktis JB197 Pyschrobacter alimentarius JB193 Roseburia inulinivorans NS Ruminococcus obeum DSMZ_25238 Staphylococcus aureus ATCC_25923 Staphylococcus aureus NS Streptococcus thermophilus TA61 Streptococcus viridans NS Vibrio casei JB196 Candida glabrata SN1502 Candida metapsilosis NS Candida parapsilosis ySN1501 Candida tropicalis SN1500 Escherichia coli AG1_pCA24N-preTA Staphylococcus xylosus BC4
*NS indicates the microbe has not specified down to the strain level
Known Antibiotic Resistances in the BCMM Library:
Ampicillin Kanamycin Carbenicillin Gentamycin Diaminopimelic acid & Carbenicillin Diaminopimelic acid & Tetracycline Diaminopimelic acid & Carbenicillin & Chloramphenicol Erythromycin Chloramphenicol Spectinomycin Tetracycline Ampicilin & Erythromycin Streptomycin Streptomycin & Kanamycin Ampicilin & Chloramphenicol Ampicilin & Tetracycline Apramycin Chloramphenicol & Kanamycin Carbenicillin & Chloramphenicol
Strains with resistance to only Ampicillin:
Escherichia coli TOP10_pET19TEV-FPGS-Ca Escherichia coli BL21(DE3)_pET19TEV Escherichia coli BL21(DE3)_pET19TEV-elen2530 Escherichia coli BL21(DE3)_pET19TEV-elen2532 Escherichia coli TOP10_elen2322-DSM_pET19TEV Escherichia coli TOP10_elen2522-11C_pET19TEV Escherichia coli TOP10_elen2530-DSM_pET19TEV Escherichia coli TOP_+_pET19TEV Escherichia coli S17-1_λ_pir_+_pSAM-Bt Escherichia coli TOP10_pET19TEV Escherichia coli pSAM-Bt
Strains with resistance to only Kanamycin:
Escherichia coli MG1655_preTA::KanR Escherichia coli Addgene_(DB3.1)_pOSIP-KH_(KanR,_HK022)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KL_(KanR,_Lambda)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KO_(KanR,_186)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KP_(KanR,_Phi80)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KT_(KanR,_P21)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-KC_(KanR,_PhiC31)_(30°C) Escherichia coli BW25113_ΔcarA Escherichia coli BW25113_ΔcarB Escherichia coli BW25113_Δcdd Escherichia coli BW25113_ΔcodA Escherichia coli BW25113_Δdcd Escherichia coli BW25113_ΔdeoA Escherichia coli BW25113_ΔglnG_(ntrC) Escherichia coli BW25113_ΔglyA Escherichia coli BW25113_ΔmetF Escherichia coli BW25113_ΔnagD_(umpH) Escherichia coli BW25113_Δndk Escherichia coli BW25113_ΔnupC Escherichia coli BW25113_ΔnupG Escherichia coli BW25113_ΔpyrB Escherichia coli BW25113_ΔpyrF Escherichia coli BW25113_ΔpyrI Escherichia coli BW25113_Δtdk Escherichia coli BW25113_Δudk Escherichia coli BW25113_Δudp Escherichia coli BW25113_ΔuidA_(gusA) Escherichia coli BW25113_Δung Escherichia coli BW25113_Δupp Escherichia coli BW25113_ΔuraA Escherichia coli BW25113_ΔycdC_(rutR) Escherichia coli BW25113_ΔycdG_(rutG) Escherichia coli BW25113_ΔycdM_(rutA) Escherichia coli BW25113_ΔyeiA_(preA) Escherichia coli BW25113_ΔyeiT_(preT) Escherichia coli BW25113_Δygf Escherichia coli BW25113_ΔyjjG Escherichia coli BW25113_DpreTA::KanR_+_preTA Escherichia coli MG1655_DpreTA::KanR_+_preTA Escherichia coli ΔuidA_pET28a Escherichia coli ΔuidA_pET28a-uidA Escherichia coli BW25113_preTA::KanR Escherichia coli (pCRRNA-G0-R0) Escherichia coli (pCRRNA-G0-R20) Escherichia coli (pCRRNA-G20-R0) Escherichia coli (pCRRNA-G20-R20) Escherichia coli (pOPS0377) Escherichia coli AV01::pAV01_(30°C) Escherichia coli AV01::pAV02_(30°C) Escherichia coli E4644_(pLC143)_(30°C)
Strains with resistance to only Carbenicillin:
Escherichia coli stbl3_(pLentiCRISPRv2+ABCB1gRNA1) Escherichia coli stbl3_(pCMVdR8.91) Escherichia coli stbl3_(pMD2.G)
Strains with resistance to only Gentamicin:
Escherichia coli PAO1_att::IC_p30_e.v. Escherichia coli PAO1_att::IC_p30-phi30-gRNA Escherichia coli PAO1_tn7::ICegg_pGuide-JBD30
Strains with resistance to Diaminopimelic acid & Carbenicillin:
Escherichia coli MAGIC_(pGT-BA3-1)
Strains resistant to Diaminopimelic acid & Tetracycline:
Escherichia coli MAGIC_(pGT-ST4-3)
Strains with resistance to Diaminopimelic acid & Carbenicillin & Chloramphenicol:
Escherichia coli MAGIC_(pGTh4-AC4-1)
Strains resistant to only Erythromycin:
Escherichia coli S17-1_(pMTL82254)
Strains with resistance to only Chloramphenicol:
Escherichia coli DH5a_pJK02 Escherichia coli DH5a_pKM126 Escherichia coli DH5a_pKM197 Escherichia coli AG1_+_pCA24N Escherichia coli AG1_pCA24N-carA Escherichia coli AG1_pCA24N-carB Escherichia coli AG1_pCA24N-cdd Escherichia coli AG1_pCA24N-dcd Escherichia coli AG1_pCA24N-deoA Escherichia coli AG1_pCA24N-dut Escherichia coli AG1_pCA24N-glnG_(ntrC) Escherichia coli AG1_pCA24N-nagD_(umpH) Escherichia coli AG1_pCA24N-ndk Escherichia coli AG1_pCA24N-nrdA Escherichia coli AG1_pCA24N-nrdB Escherichia coli AG1_pCA24N-nupC Escherichia coli AG1_pCA24N-nupG Escherichia coli AG1_pCA24N-pyrB Escherichia coli AG1_pCA24N-pyrF Escherichia coli AG1_pCA24N-pyrH Escherichia coli AG1_pCA24N-pyrI Escherichia coli AG1_pCA24N-tdk Escherichia coli AG1_pCA24N-thyA Escherichia coli AG1_pCA24N-tmk Escherichia coli AG1_pCA24N-udk Escherichia coli AG1_pCA24N-udp Escherichia coli AG1_pCA24N-uidA_(gusA) Escherichia coli AG1_pCA24N-ung Escherichia coli AG1_pCA24N-upp Escherichia coli AG1_pCA24N-uraA Escherichia coli AG1_pCA24N-ycdC_(rutR) Escherichia coli AG1_pCA24N-ycdG_(rutG) Escherichia coli AG1_pCA24N-ycdM_(rutA) Escherichia coli AG1_pCA24N-yeiA_(preA) Escherichia coli AG1_pCA24N-yeiT_(preT) Escherichia coli AG1_pCA24N-yjjG Escherichia coli TOP10_pCA24N Escherichia coli BW25113_pCA24N-preTA Escherichia coli Rosetta(DE3)_2 Escherichia coli TOP10_pCA24N-preTA Escherichia coli AG1_pCA24N-preTA
Strains with resistance to only Spectinomycin:
Escherichia coli DH10B_pSIM19 Escherichia coli (pREDCas9)_(30°C)
Strains with resistance to only Tetracycline:
Escherichia coli Addgene_(DB3.1)_pOSIP-TH_(TetR,_HK022)_(30°C) Escherichia coli Addgene_(DB3.1)_pOSIP-TT_(TetR,_P21)_(30°C) Escherichia coli DH10B_pSIM27 XL1-Blue MRF' MRF'
Strains with resistance to only Ampicilin & Erythromycin:
Escherichia coli S17-1_λ_pir_+_pNUB2-ermG Escherichia coli S17-1_λ_pir_+_pNUB2-ermG-usBT1311
Strains with resistance to Streptomycin:
Escherichia coli ST18 Escherichia coli MG1655_DpreTA_+_preTA_SmR Escherichia coli MG1655_SmR Escherichia coli W1655_F+_rpsL-SmR
Strains with resistance to Streptomycin & Kanamycin:
Escherichia coli W1655_F+_rpsL-SmR::pAV01_(30°C)_(sfgfp) Escherichia coli W1655_F+_rpsL-SmR::pAV02_(30°C)_(mcherry)
Strains with resistance to Ampicilin & Chloramphenicol:
Escherichia coli TOP10_pTIPQC1 Escherichia coli TOP10_pTIPQC2
Strains with resistance to Ampicilin & Tetracycline:
Escherichia coli TOP10_pTIPQT1 Escherichia coli TOP10_pTIPQT2 Escherichia coli S17-1_λ_pir_+_pNUB2-tetQ Escherichia coli pRK24
Strains with resistance to Apramycin:
Escherichia coli DH5alpha_+_pKC1218 Escherichia coli TOP10_+_pSET152 Escherichia coli TOP10-cgr2-pSET Escherichia coli TOP10-ELEN2530-pSET
Strains with resistance to Chloramphenicol & Kanamycin:
Escherichia coli ETPU_+_pUZ8002_(Kan)
Strains with resistance to Carbenicillin & Chloramphenicol:
Escherichia coli NEB_Stable_(pCas9-GFPT-f1A) Escherichia coli NEB_Stable_(pCas9-GFPT-f1B) Escherichia coli NEB_Stable_(pCas9-NT-f1A) Escherichia coli NEB_Stable_(pCas9-NT-f1B)